Hello!
I am building an annotation database according to the manual of SnpEff.
I got the error warning as following:
Does someone know how to fix it?
Thank you very much
I am building an annotation database according to the manual of SnpEff.
I got the error warning as following:
00:00:00 SnpEff version SnpEff 4.2 (build 2015-12-05), by Pablo Cingolani
00:00:00 Command: 'build'
00:00:00 Building database for 'IRGSP1'
00:00:00 Reading configuration file 'snpEff.config'. Genome: 'IRGSP1'
00:00:00 Reading config file: /.../snpEff/snpEff.config
java.lang.RuntimeException: Property: 'IRGSP1.genome' not found
at ca.mcgill.mcb.pcingola.interval.Genome.<init>(Genome.java:106)
at ca.mcgill.mcb.pcingola.snpEffect.Config.readGenomeConfig(Config.java:619)
at ca.mcgill.mcb.pcingola.snpEffect.Config.readConfig(Config.java:587)
at ca.mcgill.mcb.pcingola.snpEffect.Config.init(Config.java:434)
at ca.mcgill.mcb.pcingola.snpEffect.Config.<init>(Config.java:110)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.loadConfig(SnpEff.java:273)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdBuild.run(SnpEffCmdBuild.java:340)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.run(SnpEff.java:978)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.main(SnpEff.java:136)
00:00:00 Logging
00:00:00 Command: 'build'
00:00:00 Building database for 'IRGSP1'
00:00:00 Reading configuration file 'snpEff.config'. Genome: 'IRGSP1'
00:00:00 Reading config file: /.../snpEff/snpEff.config
java.lang.RuntimeException: Property: 'IRGSP1.genome' not found
at ca.mcgill.mcb.pcingola.interval.Genome.<init>(Genome.java:106)
at ca.mcgill.mcb.pcingola.snpEffect.Config.readGenomeConfig(Config.java:619)
at ca.mcgill.mcb.pcingola.snpEffect.Config.readConfig(Config.java:587)
at ca.mcgill.mcb.pcingola.snpEffect.Config.init(Config.java:434)
at ca.mcgill.mcb.pcingola.snpEffect.Config.<init>(Config.java:110)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.loadConfig(SnpEff.java:273)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEffCmdBuild.run(SnpEffCmdBuild.java:340)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.run(SnpEff.java:978)
at ca.mcgill.mcb.pcingola.snpEffect.commandLine.SnpEff.main(SnpEff.java:136)
00:00:00 Logging
Thank you very much
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