Hi, I have raw deep seq data (micro rna data). I want to separate the unique and redundant reads from the raw data. Is there any tools to identify the unique and redundant reads??
Thanks
Regards Vishwesh
Thanks
Regards Vishwesh
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You can try dedupe.sh from BBMap suite. Since you have microRNA data you are likely to have adapters in your reads. You may want/need to trim those before using dedupe.sh.
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Thanks.. In the result summary I get a value for Containment. What dos that mean...
I get result like
Unique - xxxxxx
Containment - yyyyy
Result - zzzzz
Regards
VishweshComment
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