I agree with cliffbeall - it will list multiple hits if they exist.
Perhaps use the -out=blast option to get a traditional BLAST output file.
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In my hands it gives multiple hits, if they exist. Maybe your query only matches one sequence in the target?Leave a comment:
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Multiple hits from BLAT?
Hi guys,
Is there any option of BLAT to find multiple hits of one query? The name of BLAT is 'blast like alignment tool' so I thought it would produce multiple hits.
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The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...07-08-2024, 03:19 PM
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