Hello All,
Maybe this is a redundant question and has been asked previously, but I could not find a suitable post/thread addressing it. So I am writing a new one.
I want to cluster ESTs and long read (>100 bp) data into unique transcripts. I came across a template protocol for doing so on the PlantGDB website, which uses Vmatch. Due to budget cuts in my organization, I am unable to use the licensed version of Vmatch. Therefore I am looking for alternatives to Vmatch. I found an article on ClustDB, but I am getting a "page not found" message.
Can anyone suggest some alternatives to Vmatch that I can try? I would like something that is command-line driven, so that I can automate the same.
Best Wishes
Abhijit
Maybe this is a redundant question and has been asked previously, but I could not find a suitable post/thread addressing it. So I am writing a new one.
I want to cluster ESTs and long read (>100 bp) data into unique transcripts. I came across a template protocol for doing so on the PlantGDB website, which uses Vmatch. Due to budget cuts in my organization, I am unable to use the licensed version of Vmatch. Therefore I am looking for alternatives to Vmatch. I found an article on ClustDB, but I am getting a "page not found" message.
Can anyone suggest some alternatives to Vmatch that I can try? I would like something that is command-line driven, so that I can automate the same.
Best Wishes
Abhijit
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