Hey all,
For a while ive been trying to find a way how to count specific sequence stretches directly from fastq files. For example i would like to see how many reads contain the following sequence: "TGACCCGATAGA". It seems to work with grep -c when i use fasta files but not fastq files.
Is there anything im missing?
Best,
Exo
For a while ive been trying to find a way how to count specific sequence stretches directly from fastq files. For example i would like to see how many reads contain the following sequence: "TGACCCGATAGA". It seems to work with grep -c when i use fasta files but not fastq files.
Is there anything im missing?
Best,
Exo
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