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LeonDK · 07-04-2016, 10:59 PM

Originally posted by GenoMax View Post

Thank you!

For future reference,

Code:

vcf-subset -c sample1,sample2,sample3 myFile.vcf.gz > mySlicedFile.vcf

did the trick!

and I got vcftools from https://vcftools.github.io/downloads.html

GenoMax · 07-04-2016, 05:14 AM

https://www.biostars.org/p/138694/

Discussion of next-gen sequencing related bioinformatics: resources, algorithms, open source efforts, etc

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Split VCF file based on a list of samples