Hi
I have difficulties understanding if low-complexity filtering for the query is on by default in standalone blastn.
In the description it says:
- what does `20 64 1' mean?
- If option -dust is not used at all, is it on or off?
If ON, do you have to specifiy lower case masking (-lcase_masking) or is this also the default for low-complexity?
Best
I have difficulties understanding if low-complexity filtering for the query is on by default in standalone blastn.
In the description it says:
Code:
-dust <String> Filter query sequence with DUST (Format: 'yes', 'level window linker', or 'no' to disable) Default = `20 64 1'
- If option -dust is not used at all, is it on or off?
If ON, do you have to specifiy lower case masking (-lcase_masking) or is this also the default for low-complexity?
Best