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  • Best tool to look for alterntive splicing

    Dear all,

    I would like to know which tools you use when you want to look for alternative splicing events.
    Some goodies I am particularly looking for:
    - works with either single or paired-end data
    - possibility to discover new junctions (not only reference-based)
    - possibility to quantify the events with pairing between samples (not only by group but also by treatments, sequencing dates, etc...)

    I saw few but none has all of this (particularly the pairing analysis), so I am asking the community

    Thanks in advance

    Sylvain
    Last edited by SylvainL; 10-05-2016, 01:35 AM.

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