Problem with orthofinder and dlacpar

[zillur]

Hi there,
Hope this mail will find you in sound. I was trying to install dlcpar in my linux workstation. I failed everytime. I was trying in many ways but still no luck. Here are the error messages:

[zillur@genomics dlcpar-master]$ python setup.py install --home=~
running install
running build
running build_py
running build_scripts
running install_lib
creating /home/zillur/lib
creating /home/zillur/lib/python
creating /home/zillur/lib/python/dlcpar
copying build/lib/dlcpar/__init__.py -> /home/zillur/lib/python/dlcpar
copying build/lib/dlcpar/common.py -> /home/zillur/lib/python/dlcpar
copying build/lib/dlcpar/countvector.py -> /home/zillur/lib/python/dlcpar
copying build/lib/dlcpar/recon.py -> /home/zillur/lib/python/dlcpar
copying build/lib/dlcpar/reconlib.py -> /home/zillur/lib/python/dlcpar
copying build/lib/dlcpar/reconscape.py -> /home/zillur/lib/python/dlcpar
copying build/lib/dlcpar/simplerecon.py -> /home/zillur/lib/python/dlcpar
creating /home/zillur/lib/python/dlcpar/deps
creating /home/zillur/lib/python/dlcpar/deps/rasmus
copying build/lib/dlcpar/deps/rasmus/__init__.py -> /home/zillur/lib/python/dlcpar/deps/rasmus
copying build/lib/dlcpar/deps/rasmus/linked_list.py -> /home/zillur/lib/python/dlcpar/deps/rasmus
copying build/lib/dlcpar/deps/rasmus/plotting.py -> /home/zillur/lib/python/dlcpar/deps/rasmus
copying build/lib/dlcpar/deps/rasmus/stats.py -> /home/zillur/lib/python/dlcpar/deps/rasmus
copying build/lib/dlcpar/deps/rasmus/tablelib.py -> /home/zillur/lib/python/dlcpar/deps/rasmus
copying build/lib/dlcpar/deps/rasmus/textdraw.py -> /home/zillur/lib/python/dlcpar/deps/rasmus
copying build/lib/dlcpar/deps/rasmus/timer.py -> /home/zillur/lib/python/dlcpar/deps/rasmus
copying build/lib/dlcpar/deps/rasmus/treelib.py -> /home/zillur/lib/python/dlcpar/deps/rasmus
copying build/lib/dlcpar/deps/rasmus/util.py -> /home/zillur/lib/python/dlcpar/deps/rasmus
creating /home/zillur/lib/python/dlcpar/deps/compbio
copying build/lib/dlcpar/deps/compbio/__init__.py -> /home/zillur/lib/python/dlcpar/deps/compbio
copying build/lib/dlcpar/deps/compbio/birthdeath.py -> /home/zillur/lib/python/dlcpar/deps/compbio
copying build/lib/dlcpar/deps/compbio/coal.py -> /home/zillur/lib/python/dlcpar/deps/compbio
copying build/lib/dlcpar/deps/compbio/fasta.py -> /home/zillur/lib/python/dlcpar/deps/compbio
copying build/lib/dlcpar/deps/compbio/phylo.py -> /home/zillur/lib/python/dlcpar/deps/compbio
copying build/lib/dlcpar/deps/compbio/phyloDLC.py -> /home/zillur/lib/python/dlcpar/deps/compbio
copying build/lib/dlcpar/deps/compbio/seqlib.py -> /home/zillur/lib/python/dlcpar/deps/compbio
byte-compiling /home/zillur/lib/python/dlcpar/__init__.py to __init__.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/common.py to common.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/countvector.py to countvector.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/recon.py to recon.cpython-35.pyc
  File "/home/zillur/lib/python/dlcpar/recon.py", line 213
    subtrees_snode.sort(key=lambda (root, rootchild, leaves): ids[root.name])
                                   ^
SyntaxError: invalid syntax

byte-compiling /home/zillur/lib/python/dlcpar/reconlib.py to reconlib.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/reconscape.py to reconscape.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/simplerecon.py to simplerecon.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/rasmus/__init__.py to __init__.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/rasmus/linked_list.py to linked_list.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/rasmus/plotting.py to plotting.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/rasmus/stats.py to stats.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/rasmus/tablelib.py to tablelib.cpython-35.pyc
  File "/home/zillur/lib/python/dlcpar/deps/rasmus/tablelib.py", line 353
    except Exception, e:
                    ^
SyntaxError: invalid syntax

byte-compiling /home/zillur/lib/python/dlcpar/deps/rasmus/textdraw.py to textdraw.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/rasmus/timer.py to timer.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/rasmus/treelib.py to treelib.cpython-35.pyc
  File "/home/zillur/lib/python/dlcpar/deps/rasmus/treelib.py", line 1088
    print i, parentid
          ^
SyntaxError: Missing parentheses in call to 'print'

byte-compiling /home/zillur/lib/python/dlcpar/deps/rasmus/util.py to util.cpython-35.pyc
  File "/home/zillur/lib/python/dlcpar/deps/rasmus/util.py", line 114
    print str(j) + ", ",
            ^
SyntaxError: invalid syntax

byte-compiling /home/zillur/lib/python/dlcpar/deps/compbio/__init__.py to __init__.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/compbio/birthdeath.py to birthdeath.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/compbio/coal.py to coal.cpython-35.pyc
  File "/home/zillur/lib/python/dlcpar/deps/compbio/coal.py", line 1608
    print p, N, t
          ^
SyntaxError: Missing parentheses in call to 'print'

byte-compiling /home/zillur/lib/python/dlcpar/deps/compbio/fasta.py to fasta.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/compbio/phylo.py to phylo.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/compbio/phyloDLC.py to phyloDLC.cpython-35.pyc
byte-compiling /home/zillur/lib/python/dlcpar/deps/compbio/seqlib.py to seqlib.cpython-35.pyc
running install_scripts
creating /home/zillur/bin
copying build/scripts-3.5/dlcpar -> /home/zillur/bin
copying build/scripts-3.5/dlcpar_search -> /home/zillur/bin
copying build/scripts-3.5/dlcoal_to_dlcpar -> /home/zillur/bin
copying build/scripts-3.5/dlcpar_to_dlcoal -> /home/zillur/bin
copying build/scripts-3.5/tree-events-dlc -> /home/zillur/bin
copying build/scripts-3.5/tree-events-dlcpar -> /home/zillur/bin
changing mode of /home/zillur/bin/dlcpar to 775
changing mode of /home/zillur/bin/dlcpar_search to 775
changing mode of /home/zillur/bin/dlcoal_to_dlcpar to 775
changing mode of /home/zillur/bin/dlcpar_to_dlcoal to 775
changing mode of /home/zillur/bin/tree-events-dlc to 775
changing mode of /home/zillur/bin/tree-events-dlcpar to 775
running install_egg_info
Writing /home/zillur/lib/python/dlcpar-1.0.1-py3.5.egg-info

But,

[zillur@genomics dlcpar-master]$ cd /home/zillur/bin/
[zillur@genomics bin]$ ls
dlcoal_to_dlcpar  dlcpar  dlcpar_search  dlcpar_to_dlcoal  tree-events-dlc  tree-events-dlcpar
[zillur@genomics bin]$ ./dlcpar
Traceback (most recent call last):
  File "./dlcpar", line 10, in <module>
    import dlcpar
ImportError: No module named 'dlcpar'"

When I tried to run orthofinder, it works fine, finding all the dependencies but not dlcpar.

Test can run "fastme -i /home/zillur/Desktop/zillur/phd/orthofinder/fasta/test/Results_Nov23/WorkingDirectory/SimpleTest.phy -o /home/zillur/Desktop/zillur/phd/orthofinder/fasta/test/Results_Nov23/WorkingDirectory/SimpleTest.tre" - ok
Test can run "dlcpar_search --version" - failed
ERROR: Cannot run dlcpar_search
Please check DLCpar is installed and that the executables are in the system path.

Orthogroups have been inferred but the dependencies for inferring gene trees and
orthologues have not been met. Please review previous messages for more information

Any suggestion for me?

Best Regards
Zillur