Hi
I have several vcf files, raw and annotated.
I've used vcf-merge without any option. The output file I used it check for recurrent mutations.
I'm not able to understand (as the documentation is almost none). When vcf-merge merges vcf files is it doing it by position?
What happens if I have something like (being each line a different sample)
chr pos ref alt
1 200 A C
1 200 A T
1 200 A -
1 200 A TT
Different mutations happen in same coordinates. Are thos mutationes going to be treated as the same? I think I want to have recurrent genes and recurrent positions.
Thanks
I have several vcf files, raw and annotated.
I've used vcf-merge without any option. The output file I used it check for recurrent mutations.
I'm not able to understand (as the documentation is almost none). When vcf-merge merges vcf files is it doing it by position?
What happens if I have something like (being each line a different sample)
chr pos ref alt
1 200 A C
1 200 A T
1 200 A -
1 200 A TT
Different mutations happen in same coordinates. Are thos mutationes going to be treated as the same? I think I want to have recurrent genes and recurrent positions.
Thanks
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