Hi Brian,
that dedupe function looks great! We have been waiting for such a tool.
that dedupe function looks great! We have been waiting for such a tool.
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clumpify.sh in1=r1.fq.gz in2=r2.fq.gz out1=c1.fq.gz out2=c2.fq.gz
clumpify.sh in=x.fq out=y.fq markduplicates [optical allduplicates subs=0] filterbyname.sh in=y.fq out=dupes.fq names=duplicate substring include filterbyname.sh in=y.fq out=unique.fq names=duplicate substring include=f
clumpify.sh in=x.fq out=y.fq markduplicates [optical allduplicates subs=0] filterbyname.sh in=y.fq out=dupes.fq names=duplicate substring include filterbyname.sh in=y.fq out=unique.fq names=duplicate substring include=f
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