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jay2008

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Join Date: Sep 2010

Posts: 44
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get multiple mapping info. from bowtie

10-04-2010, 06:13 AM

hello,

I used bowtie to generate SAM:
./bowtie -k 101 -v 0 -S indexes/hg18 xxx.txt xxx.sam

my question is:
how can I know whether a read is multiple mapped?
another question is
is it possible to use bowtie to trim adapter for deep sequencing data?

thanks
jian
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