hello,
I used bowtie to generate SAM:
./bowtie -k 101 -v 0 -S indexes/hg18 xxx.txt xxx.sam
my question is:
how can I know whether a read is multiple mapped?
another question is
is it possible to use bowtie to trim adapter for deep sequencing data?
thanks
jian
I used bowtie to generate SAM:
./bowtie -k 101 -v 0 -S indexes/hg18 xxx.txt xxx.sam
my question is:
how can I know whether a read is multiple mapped?
another question is
is it possible to use bowtie to trim adapter for deep sequencing data?
thanks
jian