Hi,
when I tried running cuffdiff on two files (output from STAR) it would give me the XS label missing error, then I changed my command to include the library nature (see below), but then I suddenly started getting the error: number of labels must match number of conditions.
But then if I omit the library type again I get the XS tag/label missing error indicating it needs the library info...
cuffdiff -o S46diffout -b /home/dgavino/genomes/GRCh38.primary_assembly.genome.fa —-library-type fr-firststrand -p 8 -L 2pS6,2qS4 -u /mnt/users/dgavino/Alignments/merged_asm/merged.gtf ./2pS6R1Aligned.sortedByCoord.out.bam ./2qS4R1Aligned.sortedByCoord.out.bam
Any ideas?
when I tried running cuffdiff on two files (output from STAR) it would give me the XS label missing error, then I changed my command to include the library nature (see below), but then I suddenly started getting the error: number of labels must match number of conditions.
But then if I omit the library type again I get the XS tag/label missing error indicating it needs the library info...
cuffdiff -o S46diffout -b /home/dgavino/genomes/GRCh38.primary_assembly.genome.fa —-library-type fr-firststrand -p 8 -L 2pS6,2qS4 -u /mnt/users/dgavino/Alignments/merged_asm/merged.gtf ./2pS6R1Aligned.sortedByCoord.out.bam ./2qS4R1Aligned.sortedByCoord.out.bam
Any ideas?
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