Hi all,
I am new to this forum, actually i have 454 sequences and want to find fusion genes (chromosomal translocation) may be causing cancer, right now i am using BLAT, collecting sequences having min. 100bp alignment and above 93% identity.
1) Is there any tool or pipeline that directly predict fusion genes?
2) Is there any perl script to extract result from BLAT output using my parameters?
3) Am i going in right way?
Regards.
I am new to this forum, actually i have 454 sequences and want to find fusion genes (chromosomal translocation) may be causing cancer, right now i am using BLAT, collecting sequences having min. 100bp alignment and above 93% identity.
1) Is there any tool or pipeline that directly predict fusion genes?
2) Is there any perl script to extract result from BLAT output using my parameters?
3) Am i going in right way?
Regards.
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