Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • How do I map Affymetrix probe IDs to gene symbols in R?

    I have an ExpressionSet, combArr.eset, that contains Affymetrix Human Genome U133 Plus 2.0 Array gene expression data. I also have a matrix, exprs_combArr.eset, that contains the expression data for combArr.eset. The row names for exprs_combArr.eset are the hgu133plus2 probe IDs, and the column names are the Gene Expression Omnibus sample IDs.

    I'd like to change the probe IDs in exprs_combArr.eset to their corresponding gene symbols, but I'm not sure how to do this.

    I've retrieved the hgu133plus2SYMBOL object from the hgu122plus2.db package, which contains the mappings between manufacturer identifiers and gene abbreviations, but I'm not sure how to use this to change the probe IDs in exprs_combArr.eset.

    I'm new to R and Bioconductor, and programming in general, so any help would be appreciated.
    Thank you!

Latest Articles

Collapse

  • seqadmin
    Best Practices for Single-Cell Sequencing Analysis
    by seqadmin



    While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
    Today, 07:15 AM
  • seqadmin
    Latest Developments in Precision Medicine
    by seqadmin



    Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

    Somatic Genomics
    “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
    05-24-2024, 01:16 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Today, 08:18 AM
0 responses
11 views
0 likes
Last Post seqadmin  
Started by seqadmin, Today, 08:04 AM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-03-2024, 06:55 AM
0 responses
13 views
0 likes
Last Post seqadmin  
Started by seqadmin, 05-30-2024, 03:16 PM
0 responses
27 views
0 likes
Last Post seqadmin  
Working...
X