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  • Problem installing HTSeq on MacOS

    Hi

    I am trying to install HTSeq on MacOS El Capitan (10.11.6) like this:
    pip install htseq --user

    Then I got the following error message:
    htslib/cram/cram_io.c:60:10: fatal error: 'lzma.h' file not found
    #include <lzma.h>
    ^
    1 error generated.
    error: command 'clang' failed with exit status 1

    ----------------------------------------
    Failed building wheel for pysam

    When I type:
    sudo find /usr -name lzma.h -print

    I got these:
    /usr/local/Cellar/xz/5.0.6/include/lzma/lzma.h
    /usr/local/Cellar/xz/5.0.6/include/lzma.h
    /usr/local/Cellar/xz/5.2.3/include/lzma.h
    /usr/local/include/lzma.h

    Does anybody here know the solution please??
    Thanx.

    Hiroki

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