Dear Community,
I have 12 sets of RNAseq data (4 groups) and mapped them using STAR. The resultant bam files ranged from 4G to 13 G. I then run cuffdiff on those bam files to get the FPKMs and differential genes. The process has been on-going for over a day and the log file still stopped at " Inspecting maps and determining fragment length distributions". I wonder if the cuffdiff has limit about the sample size? Is it normal this slow?
Thanks a lot for any inputs!
C.
I have 12 sets of RNAseq data (4 groups) and mapped them using STAR. The resultant bam files ranged from 4G to 13 G. I then run cuffdiff on those bam files to get the FPKMs and differential genes. The process has been on-going for over a day and the log file still stopped at " Inspecting maps and determining fragment length distributions". I wonder if the cuffdiff has limit about the sample size? Is it normal this slow?
Thanks a lot for any inputs!
C.
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