I have genomic sequencing data from two individuals. These are clones from the same cell line, but they have had a change made by homologous recombination. They should be identical, but one group of clones (all from the same colony) had an unexpected phenotype that can't be explained by the mutation. We sequenced them to try to see if there is some other mutation elsewhere.
What is the best way to compare them to find the differences?
What is the best way to compare them to find the differences?
Comment