Hi all
Is there anyway to report only mapped tags in bowtie sam output?
I tried to map reads with bowtie with -m 1 --best and --strata parameter but in mapping output(sam) reads which are not aligned are also reported...
Is there anyway to report only mapped tags in bowtie sam output?
I tried to map reads with bowtie with -m 1 --best and --strata parameter but in mapping output(sam) reads which are not aligned are also reported...
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