I've just pushed out a new release of SeqMonk (v0.25.0). This has been nearly ready to go for ages now and has loads of new stuff in it. You can see the full list of additions in the release notes, but some of the big changes are:
We've also done some profiling of the seqmonk code so it should (hopefully) be noticeably quicker than the last version.
We've also had to make a change to the file format for seqmonk (to allow for comments to be added to probe lists), so projects saved with this version will not be able to be opened in older versions. This version will open older projects just fine though.
Please have a play with the new version and report any problems in our bugzilla, or by email to me or directly to this thread.
- Adding a quantitation trend plot to look at how any quantitated data changes around a set of features
- Adde a multi-sample chi-square for application such as allele specific expression
- Allow multiple samples in the aligned probes plot and added custom sorting
- The abilty to filter raw reads against features when re-importing
- Adding a domainogram plot to look at quantitations over different window sizes
- Added ways to find sets of featutres from a list of names
- Added a nice report to completely describe how you came to a set of filtered probes
- Improved normalisation options
We've also done some profiling of the seqmonk code so it should (hopefully) be noticeably quicker than the last version.
We've also had to make a change to the file format for seqmonk (to allow for comments to be added to probe lists), so projects saved with this version will not be able to be opened in older versions. This version will open older projects just fine though.
Please have a play with the new version and report any problems in our bugzilla, or by email to me or directly to this thread.
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