Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Getting (local) tBlastx working, error: Protein provided for nucleotide sequence

    Any help would be much appreciated, I am trying to get tBlastx to work but not having any luck (error message and query in attached image).

    I have a single amino acid sequence to "BLASTx" to a large list of nt sequences. If I run the same set under tBlastn, it works perfectly, so I should be able to use the exact same query and subject for tBlastx, right?

    When I try, get get an error that a protein was used for nt, but why does it work for tblastn?

    Thanks everyone




  • #2
    Perhaps you can give a few more details about what you are trying to achieve so that we can help advise the most suitable tools. At the moment page 3 of the blast guide might help with the search types and the input / database types (nucleotide/protein). tblastx expects a nucleotide as input and searches against a nucleotide database.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Best Practices for Single-Cell Sequencing Analysis
      by seqadmin



      While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
      06-06-2024, 07:15 AM
    • seqadmin
      Latest Developments in Precision Medicine
      by seqadmin



      Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

      Somatic Genomics
      “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
      05-24-2024, 01:16 PM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 06-07-2024, 06:58 AM
    0 responses
    13 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 06-06-2024, 08:18 AM
    0 responses
    20 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 06-06-2024, 08:04 AM
    0 responses
    18 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 06-03-2024, 06:55 AM
    0 responses
    13 views
    0 likes
    Last Post seqadmin  
    Working...
    X