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  • ssearch35 results

    Hello everyone.

    Can someone explain to me what does the lambda, K, and E means?
    The result is generated using ssearch35 software.
    or maybe can share the user guide or manual?

    Thank in advance.

    Query: 641, 114 nt
    1>>>641 - 114 nt - 114 nt641.txt
    Library: ss35.txt 37666 residues in 11 sequences

    37666 residues in 11 sequences
    Statistics: (shuffled [500]) MLE statistics: Lambda= 0.1448; K=0.1411
    Algorithm: Smith-Waterman (PGopt) (6.0 Mar 2007)
    Parameters: +5/-4 matrix (5:-4), open/ext: -12/-4

    The best scores are: s-w bits E(11)
    11 (3426) [f] 570 121.9 8.6e-031
    7 (3426) [f] 570 121.9 8.6e-031
    s10 (3425) [f] 570 121.9 8.6e-031
    9 (3425) [f] 570 121.9 8.6e-031
    s4 (3425) [f] 570 121.9 8.6e-031
    2 (3425) [f] 570 121.9 8.6e-031
    6 (3422) [f] 570 121.9 8.6e-031
    5 (3422) [f] 570 121.9 8.6e-031
    3 (3422) [f] 570 121.9 8.6e-031
    1 (3424) [f] 570 121.9 8.6e-031
    8 (3424) [f] 570 121.9 8.6e-031

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