Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • ssearch35 results

    Hello everyone.

    Can someone explain to me what does the lambda, K, and E means?
    The result is generated using ssearch35 software.
    or maybe can share the user guide or manual?

    Thank in advance.

    Query: 641, 114 nt
    1>>>641 - 114 nt - 114 nt641.txt
    Library: ss35.txt 37666 residues in 11 sequences

    37666 residues in 11 sequences
    Statistics: (shuffled [500]) MLE statistics: Lambda= 0.1448; K=0.1411
    Algorithm: Smith-Waterman (PGopt) (6.0 Mar 2007)
    Parameters: +5/-4 matrix (5:-4), open/ext: -12/-4

    The best scores are: s-w bits E(11)
    11 (3426) [f] 570 121.9 8.6e-031
    7 (3426) [f] 570 121.9 8.6e-031
    s10 (3425) [f] 570 121.9 8.6e-031
    9 (3425) [f] 570 121.9 8.6e-031
    s4 (3425) [f] 570 121.9 8.6e-031
    2 (3425) [f] 570 121.9 8.6e-031
    6 (3422) [f] 570 121.9 8.6e-031
    5 (3422) [f] 570 121.9 8.6e-031
    3 (3422) [f] 570 121.9 8.6e-031
    1 (3424) [f] 570 121.9 8.6e-031
    8 (3424) [f] 570 121.9 8.6e-031

Latest Articles

Collapse

  • seqadmin
    Best Practices for Single-Cell Sequencing Analysis
    by seqadmin



    While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
    06-06-2024, 07:15 AM
  • seqadmin
    Latest Developments in Precision Medicine
    by seqadmin



    Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

    Somatic Genomics
    “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
    05-24-2024, 01:16 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 06-14-2024, 07:24 AM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-13-2024, 08:58 AM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-12-2024, 02:20 PM
0 responses
16 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-07-2024, 06:58 AM
0 responses
184 views
0 likes
Last Post seqadmin  
Working...
X