Hello,
I have RNA-seq data from 4 tissues, A, B, C, and D. The problem is that we sequenced A and B in 2015 and then C and D in 2016. If I would like to call the differentially expressed genes among those 4 samples, may I use SVAseq to remove batch effect introduced by time prior to the DEseq2 pipeline?
Thanks.
C.
I have RNA-seq data from 4 tissues, A, B, C, and D. The problem is that we sequenced A and B in 2015 and then C and D in 2016. If I would like to call the differentially expressed genes among those 4 samples, may I use SVAseq to remove batch effect introduced by time prior to the DEseq2 pipeline?
Thanks.
C.