Profiling taxonomic distribution of genes in human gut microbiome
Dear Seqanswers community,
I am trying to determine the abundance and taxonomic distribution of a gene cluster in human gut microbiome samples (metagenomic sequencing). I would like to do this using blast (diamond blast). Can you give me suggestions on how to profile the taxonomic distribution of the mapped reads (from blast)? Or is there any existing pipeline that will allow me to achieve my goal?
Any information will be highly appreciated!
Best,
Wenhan
I am trying to determine the abundance and taxonomic distribution of a gene cluster in human gut microbiome samples (metagenomic sequencing). I would like to do this using blast (diamond blast). Can you give me suggestions on how to profile the taxonomic distribution of the mapped reads (from blast)? Or is there any existing pipeline that will allow me to achieve my goal?
Any information will be highly appreciated!
Best,
Wenhan