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Error during Bfast match step

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  • Error during Bfast match step

    I get the following error when running the match step of bfast:

    Searching index file 10/10 (index #10, bin #1)...
    Reading index from /u1/reference/bfast/gatk/Homo_sapiens_assembly18_norandom.fasta.cs.10.1.bif.
    Read index from /u1/reference/bfast/gatk/Homo_sapiens_assembly18_norandom.fasta.cs.10.1.bif.
    Reads processed: 70250000************************************************************
    In function "RGMatchPrint": Fatal Error[WriteFileError]. Message: Could not write m->readLength, m->qualLength, m->read, m->qual, m->maxReached, and m->numEntries.
    The file stream error was:: Input/output error
    ***** Exiting due to errors *****


    Any suggestions?

    Jim

  • #2
    Do you have any space left in the volumen where BF is dumping the data?
    -drd

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    • #3
      That was my first thought. And yes, I do. I am actually running other instances of bfast match right now, without problems. It's just this SOLiD run that is giving me problems.

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