Announcement

Collapse

Welcome to the New Seqanswers!

Welcome to the new Seqanswers! We'd love your feedback, please post any you have to this topic: New Seqanswers Feedback.
See more
See less

known indel database for detecting somatic lesions in tumor

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • known indel database for detecting somatic lesions in tumor

    Hi,

    This may have been discussed before but I couldn't find the right info.
    I am trying to identify somatic lesions in tumor DNA.
    For point mutations, I use ucsc snp131 single base entries to screen out common polymorphisms.
    For indels, however, ucsc snp131 entries are not positioned to left most base location. As a result, my dindel/samtools output cannot be directly compared with the ucsc snp131 indel entries.

    Does anyone know where such left-most positioned indel database can be found?

    Thanks in advance,
    CSoong

    PS: I also have germline sequencing data coming along, but for now I was hoping to do some prelim analysis with know indel polymorphism in the population.
Working...
X