Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • circos

    Hello everyone !!!

    I am using this visualization tool called Circos and finding it a bit difficult to plot data and make images. I want to plot the methylation data of rat on rat genome using cirocs. So is there anyone with prior experience of doing the similar kind of work or knowledge of running circos ???

  • #2
    I suggest you follow the lessons from the site. Each lesson has code and the results of the images. Plot is complicated because it is very flexible and you have many different variables to control. Once you get your head around main plotting you should be fine.
    -drd

    Comment


    • #3
      Yes, I have used circos couple of times. Can you please let us know your issue with circos. As Drio suggested, circos is really flexible

      -Raj

      -------------------------------------------
      What got your $HERE, won't get you $THERE !
      -------------------------------------------

      Comment


      • #4
        Ideogram in circos

        Hi,

        I am trying to visualize my set of genes on the chromosome., ie want to create a customized ideogram. Can I do it using circos?

        I have a list of genes ad their coordinates. I want to see their distribution on the chromosomes. Can I do it using circos?

        I greatly appreciate your quick response.
        Last edited by anagari; 07-21-2011, 12:50 PM.

        Comment


        • #5
          For smaller datasets, an easy way of using Circos is here

          Comment

          Latest Articles

          Collapse

          • seqadmin
            The Impact of AI in Genomic Medicine
            by seqadmin



            Artificial intelligence (AI) has evolved from a futuristic vision to a mainstream technology, highlighted by the introduction of tools like OpenAI's ChatGPT and Google's Gemini. In recent years, AI has become increasingly integrated into the field of genomics. This integration has enabled new scientific discoveries while simultaneously raising important ethical questions1. Interviews with two researchers at the center of this intersection provide insightful perspectives into...
            Yesterday, 02:07 PM
          • seqadmin
            Multiomics Techniques Advancing Disease Research
            by seqadmin


            New and advanced multiomics tools and technologies have opened new avenues of research and markedly enhanced various disciplines such as disease research and precision medicine1. The practice of merging diverse data from various ‘omes increasingly provides a more holistic understanding of biological systems. As Maddison Masaeli, Co-Founder and CEO at Deepcell, aptly noted, “You can't explain biology in its complex form with one modality.”

            A major leap in the field has
            ...
            02-08-2024, 06:33 AM

          ad_right_rmr

          Collapse

          News

          Collapse

          Topics Statistics Last Post
          Started by seqadmin, 02-23-2024, 04:11 PM
          0 responses
          55 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 02-21-2024, 08:52 AM
          0 responses
          62 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 02-20-2024, 08:57 AM
          0 responses
          52 views
          0 likes
          Last Post seqadmin  
          Started by seqadmin, 02-14-2024, 09:19 AM
          0 responses
          65 views
          0 likes
          Last Post seqadmin  
          Working...
          X