circos

[vaibhav_jain]

Hello everyone !!!

I am using this visualization tool called Circos and finding it a bit difficult to plot data and make images. I want to plot the methylation data of rat on rat genome using cirocs. So is there anyone with prior experience of doing the similar kind of work or knowledge of running circos ???

[drio]

I suggest you follow the lessons from the site. Each lesson has code and the results of the images. Plot is complicated because it is very flexible and you have many different variables to control. Once you get your head around main plotting you should be fine.

[curioadmin]

Yes, I have used circos couple of times. Can you please let us know your issue with circos. As Drio suggested, circos is really flexible

-Raj

[anagari]

Ideogram in circos

Hi,

I am trying to visualize my set of genes on the chromosome., ie want to create a customized ideogram. Can I do it using circos?

I have a list of genes ad their coordinates. I want to see their distribution on the chromosomes. Can I do it using circos?

I greatly appreciate your quick response.

[colindaven]

For smaller datasets, an easy way of using Circos is here

http://tools.bat.ina.certh.gr/circoletto/