When using non-quality-trimmed fastq for BBSplit, it worked just fine!
My quality-trimming step uses BBDuk -- this command:
Thoughts on how I should revise this to prevent an invalid file format error when moving to BBSplit?
I really appreciate your helpful (and quick!) replies!
My quality-trimming step uses BBDuk -- this command:
Code:
./bbmap/bbduk.sh in=nonrRNA_bran11.fastq out=QualTrimmed_bran11.fastq qtrim=r trimq=10 overwrite=true
I really appreciate your helpful (and quick!) replies!
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