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  • SRF format for publication

    Does anyone have experience of generating SRF formatted SOLiD reads for publication?

    I know there is solid2srf, but do not know if there is a 'best practice' for generating the files required by sequence archives.

    Thanks!

  • #2
    If you want to generate SRFs for SOLiD data the solid2srf tool from ABi is the only one I know about.

    I thought most of the submissions did not require intensities anymore. Are you sure you are not fine just sending fastq files? Or even better BAMs with mapped and unmapped reads.
    -drd

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