SRF format for publication

idonaldson

Member

Join Date: Oct 2009

Posts: 37
Share

Post
#1

SRF format for publication

01-10-2011, 08:36 AM

Does anyone have experience of generating SRF formatted SOLiD reads for publication?

I know there is solid2srf, but do not know if there is a 'best practice' for generating the files required by sequence archives.

Thanks!
Tags: solid srf
drio

Senior Member

Join Date: Oct 2008

Posts: 323
Share

Post
#2

01-10-2011, 01:38 PM

If you want to generate SRFs for SOLiD data the solid2srf tool from ABi is the only one I know about.

I thought most of the submissions did not require intensities anymore. Are you sure you are not fine just sending fastq files? Or even better BAMs with mapped and unmapped reads.

-drd
Comment

Previous template Next

Beyond CRISPR/Cas9: Understand, Choose, and Use the Right Genome Editing Tool

by SEQadmin2

CRISPR/Cas9 sparked the gene editing revolution for both research and therapeutics.¹ But this system still showed severe issues that limited its applications. The most prominent were the heavy reliance on PAM sequences, delivery limitations, double-stranded breaks that prompt unintended edits and cell death, and editing inefficiency (both in targeting and in knock-in reliability).

Despite this, “CRISPR helped turn genome editing from a specialized technique into...
- Channel: Articles
07-31-2026, 11:01 AM
Proteomic Platforms: How to Choose the Right Analytical Strategy to Improve Detection and Clinical Applications

by SEQadmin2

Proteomics platforms are evolving rapidly, with advances in mass spectrometry and affinity-based approaches expanding what researchers can detect and at what scale. As the field moves toward deeper proteome coverage and clinical applications, scientists face an increasingly complex landscape of tools. This article will explore how researchers are navigating these choices to find the right platform for their work.

The systematic characterization of the human proteome has...
- Channel: Articles
07-20-2026, 11:48 AM
Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems

by SEQadmin2

Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
...
- Channel: Articles
07-09-2026, 11:10 AM

Topics	Statistics	Last Post
Consortium Completes First Full Diploid Human Genome by SEQadmin2 Started by SEQadmin2, 08-06-2026, 07:41 AM	0 responses 12 views 0 reactions	Last Post by SEQadmin2 08-06-2026, 07:41 AM
Long-Read Sequencing Closes Decades-Old Gaps in the Medaka Genome by SEQadmin2 Started by SEQadmin2, 08-03-2026, 10:13 AM	0 responses 30 views 0 reactions	Last Post by SEQadmin2 08-03-2026, 10:13 AM
New Genomic Method Uncovers Ancient Hominin DNA by SEQadmin2 Started by SEQadmin2, 07-31-2026, 02:55 AM	0 responses 40 views 0 reactions	Last Post by SEQadmin2 07-31-2026, 02:55 AM
Study Captures the First Moments of DNA Replication by SEQadmin2 Started by SEQadmin2, 07-24-2026, 12:17 PM	0 responses 26 views 0 reactions	Last Post by SEQadmin2 07-24-2026, 12:17 PM

Unconfigured Ad

SRF format for publication

Comment

Latest Articles

ad_right_rmr

News