CNVer error

[mmolstad]

Hello all,

I am new to NGS and genomic analysis, and I am having problems running the CNVer tool. When I run the run_pipeline.sh script I get errors such as:

Converged after 64 iterations
num_edges: 4463
num_nodes: 12760
bwtie_concise_to_binary: bwtie_concise_to_binary.c:99: main: Assertion `read_in==4' failed.
/Data/projects/cnver_test/cnver-0.7.2/src/run_pipeline.sh: line 132: 23573 Broken pipe cat ${FILE}
23574 Aborted (core dumped)
....
Using window_size 200, num_bins 50
make_gc_map: make_gc_map.c:324: main: Assertion `bin<num_bins && bin>=0' failed.
/Data/projects/cnver_test/cnver-0.7.2/src/run_pipeline.sh: line 171: 23722 Done cat $f
23723 Aborted (core dumped) | ${CNVER_FOLDER}/make_gc_map ${FASTA_FILES_FOLDER}/${CONTIG}.fa ${CONTIG}.masks - ${CONTIG} 200 50

I have attached more of the error message.

If anyone has any suggestions that would help me identify the problem, I would greatly appreciate the help.

Thanks alot,

Michael