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  • mohsamir
    Junior Member
    • Dec 2019
    • 1
    #1

    Regarding Deseq2 in R

    Can anyone help in this?
    When I run Deseq2 in R, it produces this "dds" subject and also the "res" subjects
    I assume that the normalized count is in the DDS dubject : is this is correct ? Can one supply a simple function to get only an excel table for the normalized read count ?
    Also a script for a simple heatmap to show the Log2FC of all genes across my conditions ?

    Thanks
    Tags: None
    • maria1230982
      Banned
      • Dec 2019
      • 2
      #2
      I found this forum by typing almost exactly this question. Hopefully someone can answer it!

        Comment

        • GenoMax
          Senior Member
          • Feb 2008
          • 7142
          #3
          You can access the normalized counts: https://support.bioconductor.org/p/66067/ Take a look at DESeq2 vignette for answers on how to plot results.

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