What aspects of the format are you struggling with
The genotypes are shows as index values on the Ref/Alt columns so in your case T is 0 and C is 1
This gives you your give genotypes for this site being T/C, C/C, C/C, T/C, T/C, T/C
The genotypes are shows as index values on the Ref/Alt columns so in your case T is 0 and C is 1
This gives you your give genotypes for this site being T/C, C/C, C/C, T/C, T/C, T/C
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