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  • BCF Tools

    Would anybody happen to know a link to where I can download BCF Tools?

    J

  • #2
    If you mean Heng Li's software, they are part of the latest samtools distribution, see

    Comment


    • #3
      Ah! thank you, epigen!!!

      Comment


      • #4
        Originally posted by JohnK View Post
        Would anybody happen to know a link to where I can download BCF Tools?

        J
        was wondering what is the command to use bcftools if it is installed as a part of samtools, please

        Comment


        • #5
          If it is installed on your computer, typing bcftools at the commandline prompt should give you something like this:

          Code:
          $ bcftools 
          
          Program: bcftools (Tools for data in the VCF/BCF formats)
          Version: 0.1.17-dev (r973:277)
          
          Usage:   bcftools <command> <arguments>
          
          Command: view      print, extract, convert and call SNPs from BCF
                   index     index BCF
                   cat       concatenate BCFs
                   ld        compute all-pair r^2
                   ldpair    compute r^2 between requested pairs
          Otherwise, have a look in the samtools directory, there should be a subdirectory called bcftools.

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