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  • mastal
    replied
    If it is installed on your computer, typing bcftools at the commandline prompt should give you something like this:

    Code:
    $ bcftools 
    
    Program: bcftools (Tools for data in the VCF/BCF formats)
    Version: 0.1.17-dev (r973:277)
    
    Usage:   bcftools <command> <arguments>
    
    Command: view      print, extract, convert and call SNPs from BCF
             index     index BCF
             cat       concatenate BCFs
             ld        compute all-pair r^2
             ldpair    compute r^2 between requested pairs
    Otherwise, have a look in the samtools directory, there should be a subdirectory called bcftools.

    Leave a comment:


  • mmmm
    replied
    Originally posted by JohnK View Post
    Would anybody happen to know a link to where I can download BCF Tools?

    J
    was wondering what is the command to use bcftools if it is installed as a part of samtools, please

    Leave a comment:


  • JohnK
    replied
    Ah! thank you, epigen!!!

    Leave a comment:


  • epigen
    replied
    If you mean Heng Li's software, they are part of the latest samtools distribution, see

    Leave a comment:


  • JohnK
    started a topic BCF Tools

    BCF Tools

    Would anybody happen to know a link to where I can download BCF Tools?

    J

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