Hi,
I got an alignment output, for each read which has a human chromosome index and its location. I'm trying to convert these records to corresponding gene ids.
Now, the question is in the output chromosome index ranges from number 1 to number 25; but the reference table I downloaded from ensemble website
list:
"7" "17" "9" "6" "20" "5"
"14" "3" "2" "4" "22" "16"
"15" "18" "1" "12" "Y" "X"
"19" "11" "8" "10" "c6_QBL" "NT_113958"
"NT_113871" "13" "NT_113935" "21" "NT_113930" "NT_113888"
"NT_113924" "c6_COX" "NT_113932" "NT_113898" "NT_113954" "MT"
"NT_113926" "NT_113933" "NT_113880" "NT_113886" "NT_113925" "NT_113936"
"NT_113951" "NT_113965" "NT_113944" "NT_113923" "NT_113931" "NT_113870"
"NT_113899" "NT_113901" "NT_113956" "NT_113934" "NT_113915" "NT_113964"
"c5_H2" "NT_113946" "NT_113957" "NT_113916" "NT_113929" "NT_113874"
"NT_113890" "NT_113949" "NT_113884" "NT_113878" "NT_113917" "NT_113906"
"NT_113960" "NT_113911" "NT_113963" "NT_113872" "NT_113881" "NT_113912"
"NT_113910" "NT_113903" "NT_113953" "NT_113937" "NT_113889" "NT_113909"
"NT_113927" "NT_113902" "NT_113885" "NT_113961" "NT_113962" "NT_113908"
"NT_113943" "NT_113966" "NT_113939"
Anyone knows which should match which? Thanks
I got an alignment output, for each read which has a human chromosome index and its location. I'm trying to convert these records to corresponding gene ids.
Now, the question is in the output chromosome index ranges from number 1 to number 25; but the reference table I downloaded from ensemble website
list:
"7" "17" "9" "6" "20" "5"
"14" "3" "2" "4" "22" "16"
"15" "18" "1" "12" "Y" "X"
"19" "11" "8" "10" "c6_QBL" "NT_113958"
"NT_113871" "13" "NT_113935" "21" "NT_113930" "NT_113888"
"NT_113924" "c6_COX" "NT_113932" "NT_113898" "NT_113954" "MT"
"NT_113926" "NT_113933" "NT_113880" "NT_113886" "NT_113925" "NT_113936"
"NT_113951" "NT_113965" "NT_113944" "NT_113923" "NT_113931" "NT_113870"
"NT_113899" "NT_113901" "NT_113956" "NT_113934" "NT_113915" "NT_113964"
"c5_H2" "NT_113946" "NT_113957" "NT_113916" "NT_113929" "NT_113874"
"NT_113890" "NT_113949" "NT_113884" "NT_113878" "NT_113917" "NT_113906"
"NT_113960" "NT_113911" "NT_113963" "NT_113872" "NT_113881" "NT_113912"
"NT_113910" "NT_113903" "NT_113953" "NT_113937" "NT_113889" "NT_113909"
"NT_113927" "NT_113902" "NT_113885" "NT_113961" "NT_113962" "NT_113908"
"NT_113943" "NT_113966" "NT_113939"
Anyone knows which should match which? Thanks
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