maq to GFF2 format
Hi,
I know this is quite an old thread but useful for me at this moment.
Searching for a method to convert a maq alignment (to human ref genome) output from me-dip seq to GFF2 format for batman but no luck so far. Is there a script already available for this or is there a conversion tool to do this?
GFF2 example:
col1 col2 col3 col4 col5 col6 col7 col8 col9
Chr1 Homo_build36 Reference 1 45 . + 1 Sequence1
How does one define column 6 (score) and column 7 (phase) from the maq alignment file?
Help appreciated
L
Hi,
I know this is quite an old thread but useful for me at this moment.
Searching for a method to convert a maq alignment (to human ref genome) output from me-dip seq to GFF2 format for batman but no luck so far. Is there a script already available for this or is there a conversion tool to do this?
GFF2 example:
col1 col2 col3 col4 col5 col6 col7 col8 col9
Chr1 Homo_build36 Reference 1 45 . + 1 Sequence1
How does one define column 6 (score) and column 7 (phase) from the maq alignment file?
Help appreciated
L
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