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  • CASAVA-1.7.0 install fails

    Dear all,

    I've got error message during CASAVA-1.7 installation ('make' step), but I couldn't understand what the exact problem is,,,

    Here is a message,

    wlan-n113-38:CASAVA-build joon$ make
    Scanning dependencies of target CASAVA_EXPORT2SAM
    [ 0%] Extracting illumina_export2sam
    [ 1%] Built target CASAVA_EXPORT2SAM
    Scanning dependencies of target CASAVA_SAMTOOLS
    [ 1%] Building the SAM/BAM library and tools
    [ 1%] Built target CASAVA_SAMTOOLS
    Scanning dependencies of target CASAVA_CHART_DIRECTOR
    [ 1%] Extracting the Chart director library and tools
    [ 2%] Built target CASAVA_CHART_DIRECTOR
    Scanning dependencies of target CASAVA_CODE_MIN
    [ 2%] Extracting the CodeMin headers and examples
    [ 2%] Built target CASAVA_CODE_MIN
    Scanning dependencies of target CASAVA_OPT
    [ 2%] Built target CASAVA_OPT
    Scanning dependencies of target casava_common
    [ 3%] Building CXX object c++/lib/common/CMakeFiles/casava_common.dir/Alignment.cpp.o
    In file included from /Users/joon/Downloads/CASAVA_v1.7.0/src/c++/include/common/Alignment.hh:22,
    from /Users/joon/Downloads/CASAVA_v1.7.0/src/c++/lib/common/Alignment.cpp:19:
    /Users/joon/Downloads/CASAVA_v1.7.0/src/c++/include/common/Sequence.hh:113: error: ‘uint’ was not declared in this scope
    /Users/joon/Downloads/CASAVA_v1.7.0/src/c++/include/common/Sequence.hh:113: error: template argument 1 is invalid
    /Users/joon/Downloads/CASAVA_v1.7.0/src/c++/include/common/Sequence.hh:113: error: template argument 2 is invalid
    make[2]: *** [c++/lib/common/CMakeFiles/casava_common.dir/Alignment.cpp.o] Error 1
    make[1]: *** [c++/lib/common/CMakeFiles/casava_common.dir/all] Error 2
    make: *** [all] Error 2

  • #2
    Problem solved
    Simply changed script (uint).

    Comment


    • #3
      I also have the same problem want to solve. Could you please tell where is the uint script, how do you change? Thanks.

      Comment

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