Dear sir,
I am trying to compile Samtools-0.1.13 on an SPARC machine running solaris 10 without success.
I get the errors below.
I would appreciate your help.
Thanks
Jose
*****
gcc -g -Wall -O2 -o samtools bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o -Lbcftools libbam.a -lbcf -lcurses -lm -lz -lsocket -lnsl
make[1]: Leaving directory `/source/SAMTOOLS/samtools-0.1.13'
make[1]: Entering directory `/source/SAMTOOLS/samtools-0.1.13/bcftools'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. call1.c -o call1.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. main.c -o main.o
gcc -g -Wall -O2 -o bcftools call1.o main.o ../kstring.o ../bgzf.o ../knetfile.o -L. -lbcf -lm -lz
Undefined first referenced
symbol in file
isinf ./libbcf.a(prob1.o)
socket ../knetfile.o
setsockopt ../knetfile.o
connect ../knetfile.o
getaddrinfo ../knetfile.o
freeaddrinfo ../knetfile.o
ld: fatal: Symbol referencing errors. No output written to bcftools
collect2: ld returned 1 exit status
make[1]: *** [bcftools] Error 1
make[1]: Leaving directory `/source/SAMTOOLS/samtools-0.1.13/bcftools'
make: *** [all-recur] Error 1
#
I am trying to compile Samtools-0.1.13 on an SPARC machine running solaris 10 without success.
I get the errors below.
I would appreciate your help.
Thanks
Jose
*****
gcc -g -Wall -O2 -o samtools bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o -Lbcftools libbam.a -lbcf -lcurses -lm -lz -lsocket -lnsl
make[1]: Leaving directory `/source/SAMTOOLS/samtools-0.1.13'
make[1]: Entering directory `/source/SAMTOOLS/samtools-0.1.13/bcftools'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. call1.c -o call1.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. main.c -o main.o
gcc -g -Wall -O2 -o bcftools call1.o main.o ../kstring.o ../bgzf.o ../knetfile.o -L. -lbcf -lm -lz
Undefined first referenced
symbol in file
isinf ./libbcf.a(prob1.o)
socket ../knetfile.o
setsockopt ../knetfile.o
connect ../knetfile.o
getaddrinfo ../knetfile.o
freeaddrinfo ../knetfile.o
ld: fatal: Symbol referencing errors. No output written to bcftools
collect2: ld returned 1 exit status
make[1]: *** [bcftools] Error 1
make[1]: Leaving directory `/source/SAMTOOLS/samtools-0.1.13/bcftools'
make: *** [all-recur] Error 1
#
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