IGV bam file

[NicoBxl]

Hi,

I've two alignment of short reads in bam format. In one sample I've a lot of alignment in one position of the sequence ( ~ 100000 reads aligned ) and in the other sample I've, in the same position, very few aligned reads ( ~ 100 ).

When I load the two bam files in IGV, I wanted to compare (visually) the two alignment. The problem is that the y axis scale is different for the two track and it seems that the two samples have the same number of aligned reads.

Here's a picture


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How can I have the same scale for the two coverage ?

Thanks

N.

[gaffa]

Right clicking the coverage track gives you some options - if you deselect "Autoscale" you can select "Set Data Range" and manually enter the range.