What is GO term

[litc]

DAVID is quite useful for GO analysis. Paste in your IDs, and specify what type they are.

Thank you very much, I'm trying it.

[litc]

You could just use BLAST on KEGG or UniProt databases to find the gene info (which generally has the GO annotations). In the case of uniProt you need the EMBL protein ID

QuickGO is good for this as well. Here's the GO annotations for your protein:
http://www.ebi.ac.uk/QuickGO/GProtein?ac=C8MHN2

Thank you very much, I'll try it and see how far can I get.

[jimmybee]

How could I get that protein sequence 's GO term? I really don't know about it.

You could just use BLAST on KEGG or UniProt databases to find the gene info (which generally has the GO annotations). In the case of uniProt you need the EMBL protein ID

QuickGO is good for this as well. Here's the GO annotations for your protein:

http://www.ebi.ac.uk/QuickGO/GProtein?ac=C8MHN2

[AdamB]

DAVID is quite useful for GO analysis. Paste in your IDs, and specify what type they are.

[litc]

Have a look at websites like KEGG or just search gene ontology in google. There are quite a few sites where you can put in accessions of gene terms and get out GO terms

Thank you very much for your quick reply, I very very appreciate it. but I'm really a newer, I got to KEGG, but don't know how to use it.

I'm interested in webs that can convert accession ids to GO terms, I google gene ontology, but found no usable info for me. could you give to some webs that can convert accession ids to GO terms.

[jimmybee]

How could I get that protein sequence 's GO term? I really don't know about it.

Have a look at websites like KEGG or just search gene ontology in google. There are quite a few sites where you can put in accessions of gene terms and get out GO terms

[litc]

GO is gene ontology.

What you have there is the genbank accession, functional name for the protein followed by the organism and strain number. No GO term

How could I get that protein sequence 's GO term? I really don't know about it.

[jimmybee]

GO is gene ontology.

What you have there is the genbank accession, functional name for the protein followed by the organism and strain number. No GO term

[litc]

Hello, I'm a newer, I don't know about GO term, what's that mean.

I have a protein sequence, I blast it to NR and got that info:

>ref|ZP_05687769.1| acyltransferase 3 [Staphylococcus aureus A9635]
gb|EEV68775.1| acyltransferase 3 [Staphylococcus aureus A9635]
Length=603

Score = 1216 bits (3147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/603 (99%), Positives = 602/603 (99%), Gaps = 0/603 (0%)

Query 1 MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLI 60
MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLI
Sbjct 1 MDTKDFKRLEKMYSPRYLPGLDGLRAFAVIGIIIYHLNAQWLSGGFLGVDTFFVISGYLI 60

Query 61 TSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAA 120
TSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAA
Sbjct 61 TSLLISEYYRTQKIDLLEFWKRRLKRLIPAVLFLICVVLTFTLIFKPELIIQMKRDAIAA 120

Query 121 IFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQT 180
IFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQT
Sbjct 121 IFYVSNWWYISQNVDYFNQFAIEPLKHLWSLAIEEQFYLLFPLVITFLLHRFKPRNIIQT 180

Query 181 LFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIV 240
LFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIV
Sbjct 181 LFIVSLISLGLMIVIHFITGDNSRVYFGTDTRLQTLLLGCILAFIWPPFALKKDISKKIV 240

Query 241 VSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSM 300
VSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSM
Sbjct 241 VSLDIIGISGFAVLMTLFFIVGDQDQWIYNGGFYIISFATLFIIAIAVHPSSLFAKFLSM 300

Query 301 KPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYIIEILLTALMAEISYRFIETPI 360
KPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVY+IEILLTALMAEISYRFIETPI
Sbjct 301 KPLLIIGKRSYSLYLWHYPIIVFVNSYYVQGQIPVYVYVIEILLTALMAEISYRFIETPI 360

Query 361 RKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTT 420
RKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTT
Sbjct 361 RKKGFKAFAFLPKKKGQFARTVLVILLLVPSIVVLSGQFDALGKQHEAEKKEKKTEFKTT 420

Query 421 KKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLV 480
KKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLV
Sbjct 421 KKKVVKKDKQEDKQTANSKEDIKKSSPLLIGDSVMVDIGNVFTKKIPNAQIDGKVGRQLV 480

Query 481 DATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEG 540
DATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEG
Sbjct 481 DATPIVKSQYKDYAKKGQKVVVELGTNGAFTKDQLNELLDSFGKADIYLVSIRVPRDYEG 540

Query 541 RINKLIYEAAEKRSNVHLVDWYKASAGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHAT 600
RINKLIYEAAEKRSNVHLVDWYKAS GHPEYFAYDGIHLEYAGSKALTDLIVKTMETHAT
Sbjct 541 RINKLIYEAAEKRSNVHLVDWYKASEGHPEYFAYDGIHLEYAGSKALTDLIVKTMETHAT 600

Query 601 NKK 603
NK+
Sbjct 601 NKR 603

Is the go term in the string : acyltransferase 3 [Staphylococcus aureus A9635]
gb|EEV68775.1| acyltransferase 3 [Staphylococcus aureus A9635],
if so, what is it?