bowtie cope with SOLiD mate-pair sequence - SEQanswers

You are currently viewing the SEQanswers forums as a guest, which limits your access. Click here to register now, and join the discussion

X

holywoool

Member

Join Date: Sep 2010

Posts: 27
- Share
- Tweet
#1

bowtie cope with SOLiD mate-pair sequence

04-02-2011, 06:06 AM

Hi,
I've got RNA-Seq data from NCBI SRA, and with SRATOOKIT I change SRA to FASTQ format.
Before mapping,should I change FASTQ to CSFASTA and QUAL files? And is there any scripts available to do this?
Any suggestion shall be appreciated!
Tags: None

Previous template Next

Non-Coding RNA Research and Technologies

by seqadmin

Non-coding RNAs (ncRNAs) do not code for proteins but play important roles in numerous cellular processes including gene silencing, developmental pathways, and more. There are numerous types including microRNA (miRNA), long ncRNA (lncRNA), circular RNA (circRNA), and more. In this article, we discuss innovative ncRNA research and explore recent technological advancements that improve the study of ncRNAs.

Nobel Prize for MicroRNA Discovery
This week,...
- Channel: Articles
10-07-2024, 08:07 AM
Recent Developments in Metagenomics

by seqadmin

Metagenomics has improved the way researchers study microorganisms across diverse environments. Historically, studying microorganisms relied on culturing them in the lab, a method that limits the investigation of many species since most are unculturable¹. Metagenomics overcomes these issues by allowing the study of microorganisms regardless of their ability to be cultured or the environments they inhabit. Over time, the field has evolved, especially with the advent...
- Channel: Articles
09-23-2024, 06:35 AM

	Topics		Statistics	Last Post
	New Computational Methods Advance Genomic Studies Across Multiple Fields by seqadmin Started by seqadmin, 10-11-2024, 06:55 AM		0 responses 11 views 0 likes	Last Post by seqadmin 10-11-2024, 06:55 AM
	Mechanical Forces in DNA Transcription Uncovered by Clemson Researchers by seqadmin Started by seqadmin, 10-02-2024, 04:51 AM		0 responses 110 views 0 likes	Last Post by seqadmin 10-02-2024, 04:51 AM
	New Epigenetic Clock Links Cheek Cells to Mortality Risk by seqadmin Started by seqadmin, 10-01-2024, 07:10 AM		0 responses 114 views 0 likes	Last Post by seqadmin 10-01-2024, 07:10 AM
	AI-Powered Blood Test Shows Promise for Early Ovarian Cancer Detection by seqadmin Started by seqadmin, 09-30-2024, 08:33 AM		1 response 119 views 0 likes	Last Post by EmiTom 10-07-2024, 06:46 AM

Working...

X