Hello,
I am trying to find cancer-specific mutations in the sequenced data.
I am using Samtools and ANNOVAR as a combination.
I was able to create a VCF file with variants calling using Samtools.
Now I am trying to annotate using ANNOVAR. But when I run the command
" table_annovar.pl vcfinput humandb/ -buildver hg38 -out myanno -remove -protocol cosmic -operation f -xref hg38_cosmic_database.txt"
I am getting the following eroor
invalid record found in VCF4 file (at least 8 tab-delimited fields expected):
I am not able to find how to eliminate this error.
Can someone please help with it?
I am trying to find cancer-specific mutations in the sequenced data.
I am using Samtools and ANNOVAR as a combination.
I was able to create a VCF file with variants calling using Samtools.
Now I am trying to annotate using ANNOVAR. But when I run the command
" table_annovar.pl vcfinput humandb/ -buildver hg38 -out myanno -remove -protocol cosmic -operation f -xref hg38_cosmic_database.txt"
I am getting the following eroor
invalid record found in VCF4 file (at least 8 tab-delimited fields expected):
I am not able to find how to eliminate this error.
Can someone please help with it?