Dear community,
I have a question.
I have an RNA-seq by Illumina pair ends. I have a reference genome and transcriptome. My question is if there is any software that I can use to map the RNA-seq reads on the reference transcriptome and retrieve the assembled transcriptome based on my sequences. I want this because my coverage is low and in this way I can use a known reference to get better information about my transcriptome too.
Regards
Luigi
I have a question.
I have an RNA-seq by Illumina pair ends. I have a reference genome and transcriptome. My question is if there is any software that I can use to map the RNA-seq reads on the reference transcriptome and retrieve the assembled transcriptome based on my sequences. I want this because my coverage is low and in this way I can use a known reference to get better information about my transcriptome too.
Regards
Luigi
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