Hi,
When I create Mappability map file (I am using the code given in Gerstein Lab http://archive.gersteinlab.org/proj/...lity_Map/Code/ ), in some cases, there are chromosomes that are missing in the output mappability map file. Does any one knows why? All the needed .fa files are in the directory of mappability map.
![Confused](https://www.seqanswers.com/core/images/smilies/confused.png)
![Frown](https://www.seqanswers.com/core/images/smilies/frown.png)
Thanks in advance
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