Hello,
I notice that with samtools pileup/mpileup, there are several positions which have variants that can be classified as SNPs. However, they fail to show up when using the subsequent SNP program in its most basic form (i.e. without any filters or flags). What can be causing these 'calls' to drop off?
Thanks,
BertieW
I notice that with samtools pileup/mpileup, there are several positions which have variants that can be classified as SNPs. However, they fail to show up when using the subsequent SNP program in its most basic form (i.e. without any filters or flags). What can be causing these 'calls' to drop off?
Thanks,
BertieW
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