Hi,
on a local installation of the latest "galaxy-tools" I mapped with "Bowtie for Illumina" and also performed "Filter SAM". It both worked well for the 22GB big fow and rev pe reads. When running "SAM-to-BAM" on the resulting 54GB file, I get the following error message:
An error occurred running this job: Samtools Version: 0.1.12a (r862)
python(4996,0x7fff70df9ca0) malloc: *** mmap(size=140735421464576) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
Error extracting alignments from
I assume it has something to do with the memory. Although I can't believe that this is a size problem, as I'm doing this on the latest 12core macpro with 16GB-RAM.
Another issue that I have in galaxy-tools is that I'm not able to save the filtered file (app. 50GB).
Thank you for your help!
on a local installation of the latest "galaxy-tools" I mapped with "Bowtie for Illumina" and also performed "Filter SAM". It both worked well for the 22GB big fow and rev pe reads. When running "SAM-to-BAM" on the resulting 54GB file, I get the following error message:
An error occurred running this job: Samtools Version: 0.1.12a (r862)
python(4996,0x7fff70df9ca0) malloc: *** mmap(size=140735421464576) failed (error code=12)
*** error: can't allocate region
*** set a breakpoint in malloc_error_break to debug
Error extracting alignments from
I assume it has something to do with the memory. Although I can't believe that this is a size problem, as I'm doing this on the latest 12core macpro with 16GB-RAM.
Another issue that I have in galaxy-tools is that I'm not able to save the filtered file (app. 50GB).
Thank you for your help!
Comment