i have used Velvet & SSAKE to build some contigs before and found that they can't take more than 10 million reads (75bp each) (it just gets really really slow beyond that)
but now i need to do a de novo assembly using much more than 10 mill reads (45mill reads/ 3.5Gbp). HOW am i going to do it? or should i just expect the program to finish in months instead in hours?
thx
jason
but now i need to do a de novo assembly using much more than 10 mill reads (45mill reads/ 3.5Gbp). HOW am i going to do it? or should i just expect the program to finish in months instead in hours?
thx
jason
Comment