Hi Dr. Bolger,
Thanks for the Trimmomatic tool. I want to use the tool and just downloaded Trimmomatic Version 0.33 on my computer. But reading through its content and the manual, I was wondering whether I can use the tool for preprocessing of my Illumina PE MiSeq data? Because in its adapters directory, I see all TruSeq files, but not MiSeq. Could it be inside NexteraPE-PE.fa? However my DNA library was made by Nextera XT system.
If your answer is 'yes', then do I have to change the name in my code from TruSeq3-PE.fa to NexteraPE-PE.fa ?
Thank you in advance for your response!
Thanks for the Trimmomatic tool. I want to use the tool and just downloaded Trimmomatic Version 0.33 on my computer. But reading through its content and the manual, I was wondering whether I can use the tool for preprocessing of my Illumina PE MiSeq data? Because in its adapters directory, I see all TruSeq files, but not MiSeq. Could it be inside NexteraPE-PE.fa? However my DNA library was made by Nextera XT system.
If your answer is 'yes', then do I have to change the name in my code from TruSeq3-PE.fa to NexteraPE-PE.fa ?
Thank you in advance for your response!
Comment